# Only cancer types with minimum 2000 mutations for SBS signatures and minimum 1000 mutations for DBS and ID signatures with average probability at least 0.75 are considered. # For real mutations on transcribed:T, untranscribed:U, bitranscribed:B and nontranscribed:N strands averaged across cancer types. MutationType Across_All_Cancer_Types T:A[C>A]A 87.333 U:A[C>A]A 48.0 B:A[C>A]A 0.0 N:A[C>A]A 325.667 T:A[C>A]C 6.333 U:A[C>A]C 2.333 B:A[C>A]C 0.0 N:A[C>A]C 46.333 T:A[C>A]G 1.333 U:A[C>A]G 0.0 B:A[C>A]G 0.0 N:A[C>A]G 11.333 T:A[C>A]T 52.0 U:A[C>A]T 38.667 B:A[C>A]T 0.333 N:A[C>A]T 233.0 T:A[C>G]A 0.333 U:A[C>G]A 0.333 B:A[C>G]A 0.0 N:A[C>G]A 11.333 T:A[C>G]C 0.333 U:A[C>G]C 0.0 B:A[C>G]C 0.0 N:A[C>G]C 14.667 T:A[C>G]G 0.667 U:A[C>G]G 1.0 B:A[C>G]G 0.0 N:A[C>G]G 6.333 T:A[C>G]T 34.0 U:A[C>G]T 49.0 B:A[C>G]T 0.0 N:A[C>G]T 164.0 T:A[C>T]A 0.333 U:A[C>T]A 0.333 B:A[C>T]A 0.0 N:A[C>T]A 12.667 T:A[C>T]C 2.667 U:A[C>T]C 1.333 B:A[C>T]C 0.0 N:A[C>T]C 33.667 T:A[C>T]G 9.333 U:A[C>T]G 9.333 B:A[C>T]G 0.0 N:A[C>T]G 57.667 T:A[C>T]T 12.667 U:A[C>T]T 9.667 B:A[C>T]T 0.0 N:A[C>T]T 66.0 T:A[T>A]A 217.0 U:A[T>A]A 105.333 B:A[T>A]A 0.333 N:A[T>A]A 549.333 T:A[T>A]C 44.667 U:A[T>A]C 22.0 B:A[T>A]C 0.0 N:A[T>A]C 136.333 T:A[T>A]G 51.0 U:A[T>A]G 24.333 B:A[T>A]G 0.0 N:A[T>A]G 156.0 T:A[T>A]T 109.667 U:A[T>A]T 65.333 B:A[T>A]T 0.0 N:A[T>A]T 320.667 T:A[T>C]A 2993.667 U:A[T>C]A 601.667 B:A[T>C]A 31.0 N:A[T>C]A 2853.667 T:A[T>C]C 79.667 U:A[T>C]C 30.667 B:A[T>C]C 0.0 N:A[T>C]C 172.0 T:A[T>C]G 422.667 U:A[T>C]G 156.333 B:A[T>C]G 2.0 N:A[T>C]G 751.667 T:A[T>C]T 1337.333 U:A[T>C]T 305.333 B:A[T>C]T 9.0 N:A[T>C]T 1395.333 T:A[T>G]A 64.667 U:A[T>G]A 49.0 B:A[T>G]A 0.333 N:A[T>G]A 204.667 T:A[T>G]C 15.667 U:A[T>G]C 14.667 B:A[T>G]C 0.0 N:A[T>G]C 43.667 T:A[T>G]G 6.667 U:A[T>G]G 2.333 B:A[T>G]G 0.0 N:A[T>G]G 35.667 T:A[T>G]T 45.667 U:A[T>G]T 45.667 B:A[T>G]T 0.0 N:A[T>G]T 127.0 T:C[C>A]A 54.0 U:C[C>A]A 39.0 B:C[C>A]A 0.0 N:C[C>A]A 249.667 T:C[C>A]C 42.0 U:C[C>A]C 29.333 B:C[C>A]C 0.0 N:C[C>A]C 195.333 T:C[C>A]G 1.333 U:C[C>A]G 0.333 B:C[C>A]G 0.0 N:C[C>A]G 10.333 T:C[C>A]T 6.667 U:C[C>A]T 3.667 B:C[C>A]T 0.0 N:C[C>A]T 55.0 T:C[C>G]A 2.667 U:C[C>G]A 2.667 B:C[C>G]A 0.0 N:C[C>G]A 32.667 T:C[C>G]C 3.667 U:C[C>G]C 4.0 B:C[C>G]C 0.0 N:C[C>G]C 32.667 T:C[C>G]G 0.667 U:C[C>G]G 1.667 B:C[C>G]G 0.0 N:C[C>G]G 7.333 T:C[C>G]T 23.667 U:C[C>G]T 38.333 B:C[C>G]T 0.0 N:C[C>G]T 117.667 T:C[C>T]A 27.0 U:C[C>T]A 24.333 B:C[C>T]A 0.0 N:C[C>T]A 115.667 T:C[C>T]C 3.667 U:C[C>T]C 2.667 B:C[C>T]C 0.0 N:C[C>T]C 31.0 T:C[C>T]G 0.0 U:C[C>T]G 0.0 B:C[C>T]G 0.0 N:C[C>T]G 0.333 T:C[C>T]T 89.0 U:C[C>T]T 88.333 B:C[C>T]T 0.0 N:C[C>T]T 317.0 T:C[T>A]A 29.333 U:C[T>A]A 18.333 B:C[T>A]A 0.0 N:C[T>A]A 108.333 T:C[T>A]C 38.333 U:C[T>A]C 18.0 B:C[T>A]C 0.0 N:C[T>A]C 117.333 T:C[T>A]G 1.667 U:C[T>A]G 1.667 B:C[T>A]G 0.0 N:C[T>A]G 22.333 T:C[T>A]T 57.0 U:C[T>A]T 40.333 B:C[T>A]T 0.0 N:C[T>A]T 211.667 T:C[T>C]A 73.0 U:C[T>C]A 38.333 B:C[T>C]A 0.333 N:C[T>C]A 194.333 T:C[T>C]C 11.667 U:C[T>C]C 3.667 B:C[T>C]C 0.0 N:C[T>C]C 46.0 T:C[T>C]G 36.333 U:C[T>C]G 22.0 B:C[T>C]G 0.0 N:C[T>C]G 113.667 T:C[T>C]T 109.667 U:C[T>C]T 52.0 B:C[T>C]T 0.333 N:C[T>C]T 256.667 T:C[T>G]A 16.0 U:C[T>G]A 12.333 B:C[T>G]A 0.333 N:C[T>G]A 57.0 T:C[T>G]C 0.667 U:C[T>G]C 1.667 B:C[T>G]C 0.0 N:C[T>G]C 4.333 T:C[T>G]G 2.667 U:C[T>G]G 1.667 B:C[T>G]G 0.0 N:C[T>G]G 17.0 T:C[T>G]T 10.667 U:C[T>G]T 10.0 B:C[T>G]T 0.0 N:C[T>G]T 36.333 T:G[C>A]A 37.667 U:G[C>A]A 26.667 B:G[C>A]A 0.0 N:G[C>A]A 163.333 T:G[C>A]C 17.333 U:G[C>A]C 9.333 B:G[C>A]C 0.0 N:G[C>A]C 77.333 T:G[C>A]G 1.667 U:G[C>A]G 0.667 B:G[C>A]G 0.0 N:G[C>A]G 12.333 T:G[C>A]T 19.333 U:G[C>A]T 14.0 B:G[C>A]T 0.0 N:G[C>A]T 103.333 T:G[C>G]A 0.0 U:G[C>G]A 0.0 B:G[C>G]A 0.0 N:G[C>G]A 1.667 T:G[C>G]C 3.667 U:G[C>G]C 5.333 B:G[C>G]C 0.0 N:G[C>G]C 30.333 T:G[C>G]G 0.0 U:G[C>G]G 0.0 B:G[C>G]G 0.0 N:G[C>G]G 0.0 T:G[C>G]T 3.0 U:G[C>G]T 2.667 B:G[C>G]T 0.0 N:G[C>G]T 27.667 T:G[C>T]A 19.333 U:G[C>T]A 18.667 B:G[C>T]A 0.0 N:G[C>T]A 100.667 T:G[C>T]C 10.0 U:G[C>T]C 10.333 B:G[C>T]C 0.0 N:G[C>T]C 61.0 T:G[C>T]G 0.333 U:G[C>T]G 0.333 B:G[C>T]G 0.0 N:G[C>T]G 6.0 T:G[C>T]T 21.333 U:G[C>T]T 22.667 B:G[C>T]T 0.0 N:G[C>T]T 102.333 T:G[T>A]A 0.667 U:G[T>A]A 0.0 B:G[T>A]A 0.0 N:G[T>A]A 8.667 T:G[T>A]C 0.333 U:G[T>A]C 0.333 B:G[T>A]C 0.0 N:G[T>A]C 3.0 T:G[T>A]G 19.0 U:G[T>A]G 13.333 B:G[T>A]G 0.0 N:G[T>A]G 96.333 T:G[T>A]T 0.333 U:G[T>A]T 0.0 B:G[T>A]T 0.0 N:G[T>A]T 11.0 T:G[T>C]A 4.333 U:G[T>C]A 2.333 B:G[T>C]A 0.0 N:G[T>C]A 36.333 T:G[T>C]C 1.0 U:G[T>C]C 0.333 B:G[T>C]C 0.0 N:G[T>C]C 14.333 T:G[T>C]G 10.0 U:G[T>C]G 7.333 B:G[T>C]G 0.0 N:G[T>C]G 55.667 T:G[T>C]T 4.333 U:G[T>C]T 2.667 B:G[T>C]T 0.0 N:G[T>C]T 41.0 T:G[T>G]A 0.333 U:G[T>G]A 0.0 B:G[T>G]A 0.0 N:G[T>G]A 2.333 T:G[T>G]C 0.333 U:G[T>G]C 0.333 B:G[T>G]C 0.0 N:G[T>G]C 5.0 T:G[T>G]G 0.0 U:G[T>G]G 0.333 B:G[T>G]G 0.0 N:G[T>G]G 0.667 T:G[T>G]T 7.333 U:G[T>G]T 10.0 B:G[T>G]T 0.0 N:G[T>G]T 39.0 T:T[C>A]A 61.667 U:T[C>A]A 48.667 B:T[C>A]A 0.0 N:T[C>A]A 244.0 T:T[C>A]C 29.667 U:T[C>A]C 20.667 B:T[C>A]C 0.0 N:T[C>A]C 121.667 T:T[C>A]G 0.667 U:T[C>A]G 0.333 B:T[C>A]G 0.0 N:T[C>A]G 11.0 T:T[C>A]T 41.0 U:T[C>A]T 43.333 B:T[C>A]T 0.0 N:T[C>A]T 198.0 T:T[C>G]A 1.667 U:T[C>G]A 2.667 B:T[C>G]A 0.0 N:T[C>G]A 29.667 T:T[C>G]C 10.0 U:T[C>G]C 10.0 B:T[C>G]C 0.0 N:T[C>G]C 65.333 T:T[C>G]G 0.0 U:T[C>G]G 0.333 B:T[C>G]G 0.0 N:T[C>G]G 0.333 T:T[C>G]T 112.333 U:T[C>G]T 234.333 B:T[C>G]T 0.333 N:T[C>G]T 513.333 T:T[C>T]A 23.667 U:T[C>T]A 24.667 B:T[C>T]A 0.0 N:T[C>T]A 107.333 T:T[C>T]C 5.0 U:T[C>T]C 6.333 B:T[C>T]C 0.0 N:T[C>T]C 42.333 T:T[C>T]G 1.0 U:T[C>T]G 2.0 B:T[C>T]G 0.0 N:T[C>T]G 19.667 T:T[C>T]T 94.0 U:T[C>T]T 129.0 B:T[C>T]T 0.0 N:T[C>T]T 399.333 T:T[T>A]A 80.0 U:T[T>A]A 69.667 B:T[T>A]A 0.0 N:T[T>A]A 311.333 T:T[T>A]C 23.333 U:T[T>A]C 16.667 B:T[T>A]C 0.333 N:T[T>A]C 114.0 T:T[T>A]G 18.0 U:T[T>A]G 19.333 B:T[T>A]G 0.0 N:T[T>A]G 107.667 T:T[T>A]T 27.667 U:T[T>A]T 27.0 B:T[T>A]T 0.0 N:T[T>A]T 149.667 T:T[T>C]A 73.0 U:T[T>C]A 55.333 B:T[T>C]A 0.333 N:T[T>C]A 262.333 T:T[T>C]C 12.333 U:T[T>C]C 7.0 B:T[T>C]C 0.0 N:T[T>C]C 62.0 T:T[T>C]G 27.333 U:T[T>C]G 24.667 B:T[T>C]G 0.0 N:T[T>C]G 124.667 T:T[T>C]T 29.333 U:T[T>C]T 25.667 B:T[T>C]T 0.0 N:T[T>C]T 143.0 T:T[T>G]A 43.0 U:T[T>G]A 52.667 B:T[T>G]A 0.667 N:T[T>G]A 158.0 T:T[T>G]C 11.667 U:T[T>G]C 16.0 B:T[T>G]C 0.0 N:T[T>G]C 50.667 T:T[T>G]G 12.667 U:T[T>G]G 9.667 B:T[T>G]G 0.0 N:T[T>G]G 56.0 T:T[T>G]T 75.667 U:T[T>G]T 94.333 B:T[T>G]T 0.333 N:T[T>G]T 211.667 # There must be at least 1000 mutations on the strands. # Signature and mutation type must have at least 5% of all signature mutations on the strands. # Odds ratio between fold change of real mutations and fold change of simulated mutations must be at least 1.1. cancer_type signature mutation_type Transcribed_real_count UnTranscribed_real_count NonTranscribed_real_count Transcribed_mean_sims_count UnTranscribed_mean_sims_count NonTranscribed_mean_sims_count transcribed_versus_untranscribed_p_value transcribed_versus_untranscribed_q_value percentage_of_mutations_on_strands signature_number_of_mutations_on_strands significant_strand FC_REAL FC_SIMS FC fold_change_1.1 fold_change_1.2 fold_change_1.3 fold_change_1.5 fold_change_1.75 fold_change_2+ Transcribed_real_count.1 Transcribed_mean_sims_count.1 Transcribed_min_sims_count Transcribed_max_sims_count Transcribed_sims_count_list UnTranscribed_real_count.1 UnTranscribed_mean_sims_count.1 UnTranscribed_min_sims_count UnTranscribed_max_sims_count UnTranscribed_sims_count_list NonTranscribed_real_count.1 NonTranscribed_mean_sims_count.1 NonTranscribed_min_sims_count NonTranscribed_max_sims_count NonTranscribed_sims_count_list ESCC SBS16 C>A 0.0 0.0 0.0 0.0 0.0 0.0 1.0 1.0 0.0 3463.0 0.0 0.0 0.0 0.0 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 0.0 0.0 0.0 0.0 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 0.0 0.0 0.0 0.0 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] ESCC SBS16 C>G 0.0 0.0 0.0 0.0 0.0 0.0 1.0 1.0 0.0 3463.0 0.0 0.0 0.0 0.0 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 0.0 0.0 0.0 0.0 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 0.0 0.0 0.0 0.0 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] ESCC SBS16 C>T 0.0 0.0 0.0 0.0 0.0 0.0 1.0 1.0 0.0 3463.0 0.0 0.0 0.0 0.0 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 0.0 0.0 0.0 0.0 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 0.0 0.0 0.0 0.0 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] ESCC SBS16 T>A 0.0 0.0 0.0 0.0 0.0 0.0 1.0 1.0 0.0 3463.0 0.0 0.0 0.0 0.0 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 0.0 0.0 0.0 0.0 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 0.0 0.0 0.0 0.0 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] ESCC SBS16 T>C 1928.0 300.0 1235.0 723.07 699.27 2022.31 5.161338296313379e-122 1.0434397868808138e-120 100.0 3463.0 Transcribed 6.427 1.034 6.215 1 1 1 1 1 1 1928.0 723.07 648.0 777.0 [721, 683, 734, 705, 695, 738, 714, 721, 689, 744, 736, 737, 690, 732, 753, 722, 754, 698, 702, 676, 738, 727, 717, 712, 721, 700, 681, 723, 708, 759, 752, 729, 760, 734, 748, 751, 726, 776, 743, 740, 712, 648, 729, 667, 772, 671, 725, 734, 750, 690, 702, 774, 760, 745, 703, 675, 701, 775, 705, 730, 704, 730, 687, 694, 750, 729, 759, 763, 716, 756, 750, 692, 722, 697, 721, 719, 730, 694, 685, 710, 732, 777, 682, 699, 711, 716, 742, 730, 706, 731, 739, 711, 723, 736, 740, 748, 751, 730, 706, 732] 300.0 699.27 634.0 743.0 [697, 678, 716, 696, 723, 705, 689, 688, 730, 671, 668, 676, 716, 713, 697, 740, 728, 688, 681, 705, 708, 740, 670, 728, 683, 707, 743, 688, 727, 688, 689, 741, 702, 720, 703, 686, 701, 657, 667, 722, 667, 714, 649, 732, 696, 719, 678, 637, 721, 703, 728, 706, 671, 687, 713, 715, 702, 697, 701, 693, 701, 681, 721, 729, 702, 686, 685, 679, 634, 671, 687, 720, 695, 665, 704, 725, 732, 715, 700, 689, 666, 698, 723, 674, 728, 730, 673, 678, 678, 711, 727, 716, 704, 675, 684, 723, 724, 697, 704, 689] 1235.0 2022.31 1966.0 2098.0 [2027, 2079, 1992, 2040, 2021, 1999, 2045, 2031, 2025, 2030, 2049, 2031, 2039, 2004, 1990, 1979, 1966, 2060, 2057, 2061, 1996, 1978, 2062, 2004, 2037, 2040, 2022, 2038, 2008, 2003, 2006, 1976, 1984, 1996, 1999, 2001, 2013, 2014, 2034, 1980, 2066, 2089, 2062, 2050, 1978, 2053, 2038, 2068, 1979, 2048, 2012, 1969, 2015, 2013, 2030, 2052, 2045, 1971, 2041, 2023, 2041, 2036, 2037, 2014, 2002, 2029, 2001, 2003, 2098, 2011, 2009, 2035, 2027, 2078, 2021, 2003, 1980, 2034, 2060, 2045, 2044, 1972, 2040, 2070, 2002, 1994, 2026, 2037, 2058, 2009, 1975, 2023, 2019, 2028, 2026, 1976, 1973, 2017, 2035, 2025] ESCC SBS16 T>G 0.0 0.0 0.0 0.0 0.0 0.0 1.0 1.0 0.0 3463.0 0.0 0.0 0.0 0.0 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 0.0 0.0 0.0 0.0 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 0.0 0.0 0.0 0.0 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] Liver-HCC SBS16 C>A 0.0 0.0 0.0 0.0 0.0 0.0 1.0 1.0 0.0 3127.0 0.0 0.0 0.0 0.0 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 0.0 0.0 0.0 0.0 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 0.0 0.0 0.0 0.0 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] Liver-HCC SBS16 C>G 32.0 81.0 87.0 41.05 44.62 115.26 0.004777162024362888 0.018207995965370996 6.396 3127.0 Untranscribed 2.531 1.087 2.329 1 1 1 1 1 1 32.0 41.05 26.0 57.0 [33, 43, 41, 33, 37, 41, 35, 43, 43, 55, 36, 44, 40, 32, 40, 46, 39, 47, 46, 57, 38, 34, 38, 43, 40, 47, 42, 43, 45, 47, 40, 33, 39, 39, 43, 38, 42, 51, 41, 36, 40, 43, 36, 35, 35, 52, 44, 48, 39, 42, 34, 38, 46, 26, 32, 46, 36, 39, 35, 42, 50, 37, 38, 41, 42, 42, 36, 51, 49, 38, 46, 41, 37, 51, 43, 33, 44, 37, 39, 36, 44, 34, 42, 50, 35, 42, 43, 41, 41, 44, 41, 46, 37, 46, 41, 49, 41, 29, 43, 47] 81.0 44.62 29.0 64.0 [46, 40, 37, 41, 42, 51, 36, 47, 52, 44, 51, 46, 42, 41, 44, 49, 51, 34, 47, 46, 44, 46, 46, 45, 44, 47, 43, 46, 47, 41, 42, 47, 46, 39, 49, 44, 41, 38, 46, 50, 44, 57, 50, 46, 46, 40, 42, 39, 39, 50, 44, 40, 33, 64, 52, 33, 55, 47, 44, 36, 39, 44, 52, 37, 46, 48, 48, 38, 49, 49, 47, 39, 50, 29, 53, 44, 43, 41, 51, 44, 39, 47, 48, 42, 49, 50, 43, 33, 53, 39, 39, 45, 54, 45, 50, 36, 46, 52, 42, 40] 87.0 115.26 99.0 130.0 [121, 117, 122, 127, 121, 108, 130, 111, 108, 102, 113, 112, 118, 127, 116, 110, 111, 121, 108, 99, 119, 120, 116, 116, 116, 108, 117, 113, 108, 113, 118, 120, 115, 124, 109, 118, 117, 111, 113, 116, 116, 101, 116, 121, 119, 109, 117, 113, 123, 108, 123, 122, 121, 110, 116, 122, 111, 114, 122, 122, 112, 119, 112, 122, 112, 111, 117, 113, 105, 113, 108, 120, 114, 120, 104, 123, 115, 123, 110, 121, 119, 119, 111, 113, 117, 110, 117, 127, 106, 118, 121, 110, 109, 110, 109, 118, 113, 120, 115, 115] Liver-HCC SBS16 C>T 0.0 0.0 0.0 0.0 0.0 0.0 1.0 1.0 0.0 3127.0 0.0 0.0 0.0 0.0 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 0.0 0.0 0.0 0.0 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] 0.0 0.0 0.0 0.0 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] Liver-HCC SBS16 T>A 54.0 24.0 80.0 33.45 31.51 90.78 0.038299692329439784 0.12333952783651583 5.053 3127.0 Transcribed 2.25 1.062 2.12 1 1 1 1 1 1 54.0 33.45 16.0 48.0 [35, 27, 37, 31, 20, 34, 22, 37, 16, 33, 39, 30, 37, 29, 31, 30, 40, 33, 37, 32, 31, 31, 36, 38, 38, 26, 36, 37, 34, 31, 29, 43, 31, 30, 33, 30, 30, 31, 34, 35, 27, 34, 32, 26, 35, 31, 37, 40, 33, 42, 45, 40, 27, 37, 27, 43, 29, 45, 38, 32, 37, 27, 40, 37, 36, 37, 27, 36, 33, 28, 26, 28, 36, 31, 37, 31, 27, 32, 40, 40, 30, 37, 36, 28, 36, 33, 32, 32, 37, 39, 48, 30, 33, 30, 35, 30, 34, 34, 35, 36] 24.0 31.51 22.0 45.0 [27, 29, 31, 36, 45, 32, 40, 32, 31, 37, 34, 33, 38, 32, 28, 24, 25, 34, 30, 27, 35, 40, 29, 30, 31, 44, 30, 40, 24, 25, 32, 34, 27, 32, 37, 40, 39, 30, 41, 26, 22, 39, 27, 33, 27, 32, 34, 29, 32, 37, 26, 28, 34, 27, 36, 27, 26, 22, 31, 34, 28, 32, 34, 28, 24, 27, 33, 32, 33, 29, 32, 35, 26, 26, 31, 31, 36, 42, 31, 30, 31, 30, 36, 30, 30, 31, 36, 32, 30, 30, 28, 30, 32, 28, 25, 39, 31, 30, 29, 29] 80.0 90.78 79.0 108.0 [95, 99, 88, 90, 91, 90, 93, 86, 108, 85, 82, 92, 81, 94, 96, 101, 91, 89, 89, 96, 89, 85, 90, 87, 87, 86, 90, 81, 97, 100, 94, 79, 98, 94, 86, 87, 87, 94, 81, 95, 106, 82, 96, 97, 93, 93, 85, 86, 91, 79, 84, 88, 94, 93, 92, 85, 101, 89, 86, 90, 91, 96, 86, 90, 96, 91, 96, 88, 91, 98, 97, 94, 93, 98, 89, 94, 94, 82, 85, 85, 95, 88, 84, 97, 89, 92, 87, 91, 90, 86, 81, 95, 90, 97, 98, 86, 91, 92, 92, 90] Liver-HCC SBS16 T>C 1806.0 183.0 708.0 559.18 556.85 1567.2 6.247103289080215e-141 1.3735119507761772e-139 86.249 3127.0 Transcribed 9.869 1.004 9.828 1 1 1 1 1 1 1806.0 559.18 509.0 620.0 [572, 552, 536, 605, 575, 565, 549, 529, 563, 574, 542, 572, 578, 612, 572, 581, 537, 540, 551, 557, 570, 540, 569, 554, 577, 558, 545, 600, 563, 541, 568, 553, 569, 533, 509, 547, 579, 620, 524, 549, 586, 530, 554, 571, 556, 561, 577, 519, 559, 553, 536, 566, 547, 530, 564, 571, 581, 551, 525, 526, 603, 547, 552, 585, 539, 519, 578, 558, 563, 548, 565, 552, 584, 598, 576, 552, 577, 529, 526, 550, 543, 520, 559, 559, 592, 538, 545, 548, 528, 555, 555, 575, 576, 600, 602, 559, 577, 564, 556, 573] 183.0 556.85 502.0 613.0 [562, 556, 567, 568, 543, 567, 513, 560, 577, 533, 551, 533, 574, 555, 536, 575, 579, 593, 528, 534, 542, 533, 597, 556, 545, 577, 554, 558, 545, 560, 578, 544, 548, 559, 520, 550, 567, 502, 568, 580, 589, 540, 539, 549, 563, 549, 569, 554, 560, 591, 541, 511, 572, 576, 542, 583, 533, 520, 596, 543, 547, 549, 563, 568, 584, 551, 572, 562, 533, 586, 567, 534, 546, 566, 599, 580, 537, 593, 580, 551, 575, 613, 529, 555, 573, 550, 557, 562, 571, 541, 541, 564, 549, 529, 504, 542, 589, 527, 572, 567] 708.0 1567.2 1505.0 1653.0 [1550, 1572, 1583, 1511, 1568, 1552, 1624, 1590, 1543, 1573, 1590, 1578, 1533, 1514, 1574, 1536, 1566, 1551, 1607, 1587, 1571, 1609, 1515, 1567, 1564, 1547, 1581, 1530, 1572, 1587, 1538, 1585, 1577, 1590, 1653, 1597, 1537, 1563, 1589, 1550, 1508, 1612, 1587, 1560, 1560, 1577, 1541, 1607, 1564, 1541, 1605, 1600, 1562, 1576, 1574, 1528, 1567, 1614, 1562, 1609, 1537, 1586, 1568, 1532, 1558, 1610, 1531, 1562, 1591, 1547, 1564, 1592, 1552, 1523, 1505, 1547, 1568, 1560, 1573, 1583, 1562, 1556, 1595, 1571, 1521, 1601, 1585, 1571, 1585, 1587, 1586, 1547, 1561, 1554, 1577, 1585, 1515, 1591, 1561, 1542] Liver-HCC SBS16 T>G 25.0 12.0 35.0 14.2 13.73 42.34 0.29957223137767786 0.6676130520211274 2.303 3127.0 Transcribed 2.083 1.034 2.014 1 1 1 1 1 1 25.0 14.2 6.0 23.0 [11, 15, 12, 14, 19, 12, 11, 12, 10, 19, 15, 6, 15, 16, 16, 23, 11, 14, 15, 17, 21, 19, 11, 15, 19, 10, 17, 11, 15, 13, 14, 9, 15, 12, 9, 8, 22, 18, 17, 14, 13, 10, 14, 7, 15, 19, 9, 19, 16, 13, 16, 14, 12, 9, 14, 14, 14, 12, 15, 23, 10, 20, 15, 13, 16, 18, 15, 12, 22, 15, 12, 12, 10, 15, 14, 17, 17, 14, 14, 14, 15, 19, 14, 10, 12, 15, 8, 12, 14, 14, 13, 18, 16, 14, 22, 12, 17, 13, 10, 7] 12.0 13.73 7.0 22.0 [15, 11, 21, 15, 13, 12, 9, 13, 14, 10, 15, 11, 12, 12, 13, 13, 19, 15, 13, 15, 11, 12, 15, 14, 11, 13, 13, 12, 12, 16, 11, 21, 22, 12, 16, 11, 16, 16, 16, 17, 13, 13, 16, 11, 11, 11, 19, 12, 16, 17, 10, 16, 18, 12, 10, 18, 21, 14, 13, 13, 20, 10, 19, 18, 14, 14, 11, 15, 11, 12, 14, 12, 18, 12, 13, 13, 15, 14, 9, 7, 15, 16, 14, 17, 15, 14, 15, 11, 16, 11, 9, 11, 8, 16, 9, 13, 7, 17, 15, 11] 35.0 42.34 34.0 53.0 [44, 44, 37, 41, 38, 47, 50, 45, 46, 41, 40, 53, 43, 43, 41, 34, 40, 41, 42, 38, 39, 39, 44, 41, 41, 47, 40, 47, 43, 41, 45, 40, 35, 47, 46, 51, 34, 37, 37, 39, 44, 47, 40, 52, 44, 41, 42, 40, 38, 40, 45, 40, 40, 49, 46, 39, 35, 44, 43, 34, 40, 42, 36, 39, 40, 38, 44, 43, 37, 43, 45, 46, 42, 43, 43, 40, 38, 42, 47, 49, 40, 36, 42, 44, 43, 42, 47, 47, 42, 46, 49, 41, 46, 40, 40, 45, 46, 40, 45, 52] Summary across all cancer types signature mutation_type strand fold_change_1.1 len(fold_change_1.1_cancer_types) fold_change_1.2 len(fold_change_1.2_cancer_types) fold_change_1.3 len(fold_change_1.3_cancer_types) fold_change_1.5 len(fold_change_1.5_cancer_types) fold_change_1.75 len(fold_change_1.75_cancer_types) fold_change_2+ len(fold_change_2+_cancer_types) all_cancer_types_list len(all_cancer_types_list) avg_fold_change SBS16 T>C Transcribed ['ESCC', 'Liver-HCC'] 2 ['ESCC', 'Liver-HCC'] 2 ['ESCC', 'Liver-HCC'] 2 ['ESCC', 'Liver-HCC'] 2 ['ESCC', 'Liver-HCC'] 2 ['ESCC', 'Liver-HCC'] 2 ['ESCC', 'Liver-HCC'] 2 2.0